1 Installation

The normpatch package can be installed directly from GitHub using BiocManager::install(). For typical RNA-seq workflows, we also recommend installing edgeR and DESeq2, which provide DEG testing methods and optional functions used within DEGES-based normalization.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install(c("edgeR", "DESeq2", "bitdessin/normpatch"))